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    Allocation of shared costs and depreciation: apportionment on reasonable basis and fair proportion affects tonnage tax computations.
    Clause 228(14) requires common costs attributable to the tonnage tax business to be allocated on a reasonable basis, with taxpayers maintaining records to support apportionment. Clause 228(15) requires depreciation for assets other than qualifying ships to be apportioned on a fair proportion determined by the Assessing Officer with reference to actual use. Both provisions mirror Section 115VJ, vesting discretion in the AO and preserving the objective of preventing tax arbitrage while increasing documentation and compliance burdens.
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    Tonnage tax regime: clarifies qualifying shipping income, market value inter company valuation, and related party anti avoidance adjustments.
    Tonnage tax applies to qualifying shipping income measured by net tonnage, defined as profits from specified core shipping activities and prescribed incidental activities; incidental income above a prescribed threshold is excluded. Inter business transfers must be computed at market value, with assessing officer power to use reasonable bases in exceptional cases. Related party arrangements producing more than ordinary profits may be adjusted to reasonable levels. The Central Government may exclude activities or set limits by notification subject to parliamentary laying. Losses in tonnage computation are ignored.
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    Allocation of tonnage income: proportional or independent computation affects tax treatment of jointly operated qualifying ships.
    Computation of tonnage income for jointly operated qualifying ships follows a two-step approach: where participating companies' shares are definite and ascertainable, income is allocated proportionately to each company; where shares are not definite and ascertainable, tonnage income for each operator is computed as if it were the sole operator. The rule aligns taxation with economic interest, creates documentary and compliance incentives, functions as an anti-avoidance measure, and may interact with cross-border tax rules, requiring clearer guidance on "definite and ascertainable" shares and documentation standards.
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    Tonnage tax regime: ships' taxable income computed by daily tonnage rates and aggregation, excluding deductions.
    Clause 227(1)-(6) prescribes a ship wise tonnage tax: each qualifying ship's tonnage income equals its daily tonnage income multiplied by qualifying days, with daily rates set by a four tier slab linked to certified net tonnage. Tonnage includes certified physical tonnage and prescribed deemed tonnage for slot and sharing arrangements, rounded to the nearest hundred tons. A non obstante clause bars any deductions or set offs, making the computed tonnage income the exclusive tax base under the Part.
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    Tonnage tax scheme: deemed tonnage income treated as business profits, excluding actual shipping income under eligibility conditions.
    Clause 226(7) mandates that tonnage income be computed under a separate formulaic provision and be deemed to be the profits chargeable under business income, while expressly excluding the actual "relevant shipping income" from tax once the tonnage computation applies; these effects are conditional on compliance with the Part's eligibility, option, separation, and record keeping requirements.
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    Tonnage tax scheme: elective presumptive taxation for shipping income, requiring separate accounting and exclusive computation under qualifying criteria.
    The tonnage tax scheme is an elective presumptive regime requiring eligible companies operating qualifying ships to compute profits from that business exclusively under the tonnage basis; the tonnage tax business is treated as a separate business with independent computation and accounting, and companies not opting or ineligible must compute shipping profits under the normal provisions of the Act.
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    Qualifying ship definition governs tonnage tax eligibility by tying registration, certification, and operational use to tax benefit access.
    The definition of qualifying ship in Clause 235(i) requires three operative conditions for tonnage tax eligibility: a minimum net tonnage, registration under the relevant shipping statute or an authorised foreign licence, and a valid certificate evidencing net tonnage. It lists explicit exclusions-vessels providing services normally provided on land, fishing vessels, factory ships, pleasure crafts, harbour and river ferries, offshore installations-and disqualifies vessels used for fishing beyond a specified threshold in a tax year, anchoring eligibility in maritime regulatory certification and operational use.
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    Place of effective management central to qualifying company status, restricting tonnage tax benefits to genuinely India-managed shipping firms.
    The qualifying company for the tonnage tax regime must satisfy four cumulative conditions: be an Indian company; have its place of effective management in India-defined to include decisions made by executives as well as the board; own at least one qualifying ship; and have its main object as operating ships. Clause 235(h) consolidates these criteria within a broader definitional framework and references updated maritime legislation to clarify eligibility and reduce interpretive disputes.
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    Tonnage tax eligibility defined by operation status: owners and charterers qualify, long term bareboat lessors excluded.
    Clause 226(1) treats a company as operating a ship or inland vessel if it owns or charters a vessel, including partial charters such as slot, space, or joint charters, and excludes companies that have chartered out vessels on bareboat charter or bareboat charter cum demise terms for periods exceeding three years, thereby distinguishing operational risk bearing operators from passive, long term financiers for purposes of the tonnage tax scheme.
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    Tonnage tax regime: option to compute shipping income on a tonnage basis with deeming treatment as business profits.
    Clause 225 creates a self-contained tonnage tax regime for companies operating qualifying ships, allowing an option to compute income under its Part with a deeming provision treating that income as profits and gains of business; key operational questions concern the definition of qualifying ships, the option's exercise and lock-in mechanics, and interaction with loss set-off, allowances, and other tax measures.
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    Tonnage tax definitions: expanded, self-contained eligibility rules broaden coverage and tighten residency and exclusion tests.
    Clause 235 consolidates and expands tonnage tax definitions by explicitly including inland vessels, embedding a detailed qualifying company test requiring Indian residency, ownership of qualifying ships, principal shipping business, and a specified place of effective management; it also defines qualifying ship with tonnage, registration/licensing and certification requirements and enumerated exclusions to prevent abuse.
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    Pass-through taxation preserves investor-level tax treatment of investment fund income while ring-fencing fund-level losses.
    Clause 224 restates a pass-through regime: income from investments in a regulated fund is taxed in the hands of unit holders as if held directly, while business income remains taxable at the fund level. Business losses are ring fenced at the fund; other losses pass through subject to holding period conditions and transitional attribution of legacy losses to unit holders. Income retained by the fund is deemed credited to unit holders at year end and prescribed statements must be furnished to unit holders and tax authorities to secure transparency and enforcement.
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    Pass-through taxation for business trusts preserves income character and shifts tax consequences to unit holders with reporting duties.
    The clause establishes a statutory pass-through mechanism under which income distributed by business trusts is deemed to retain its original character and proportion in the hands of unit holders, while subjecting the trust's total income to tax at the maximum marginal rate subject to specified withholding provisions; it also deems certain scheduled categories of distributed income taxable on distribution, carves out specified statutory exceptions, and imposes prescribed reporting obligations on payers to unit holders and tax authorities.
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    Pass-through taxation of venture capital income taxes investors as if invested directly, with reporting and deemed-credit safeguards.
    Pass-through taxation requires that income arising to investors from venture capital companies or funds be taxed in the investor's hands as if invested directly, with the fund and payer furnishing prescribed statements to investors and tax authorities; undistributed income is deemed credited to investors at year-end in proportion to entitlement, while income already included on an accrual basis is not taxed again on actual payment; specified investment funds are excluded and key terms are defined in the schedule.
    Act RulesBills
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    Tax on accreted income: transferees and officers may be deemed assessees in default, with liability limited to asset value.
    Clause 352(8) deems the specified person (NPO) and its principal officer or trustee to be assessee in default for unpaid tax on accreted income and applies all recovery provisions of the Act; it also deems a transferee of assets in specified dissolution cases to be an assessee in default in respect of such tax. Clause 352(9) limits the transferee's liability to the extent the asset received is capable of meeting the liability, ensuring proportionality in recovery.
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    Accreted income interest compels prompt tax payment and creates joint personal liability for trustees and principal officers.
    Clause 352(7) imposes simple interest for delayed payment of tax on accreted income, with joint and several liability on the specified person and the principal officer or trustee; interest is computed monthly (any part-month treated as a full month) using an explicit formula, and liable persons are deemed assessee in default to enable statutory recovery mechanisms.
    Act RulesBills
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    Exit tax on accreted income expands triggers and fixes final levy after prescribed valuation and procedural safeguards.
    A tax on accreted income charges NPOs additional income tax at the maximum marginal rate when specified events occur; accreted income equals aggregate fair market value of assets less total liabilities on a specified date, computed under prescribed valuation methods, with exclusions as prescribed. The Assessing Officer must afford a hearing before ordering tax, the bill sets a detailed table of triggering events and payment timelines, and the tax payment is final with no further credit or deduction allowed.
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    Pass-through taxation for securitisation trust income preserves investor-level taxation while mandating reporting and deemed-accrual rules.
    Clause 221 establishes a pass-through taxation regime for income from securitisation trusts, preserving the character and proportion of underlying income in the hands of investors, deeming unpaid accruals as credited on the last day of the tax year to prevent deferral, requiring prescribed statements to investors and tax authorities, and preventing double taxation by excluding income already taxed on accrual from subsequent inclusion on actual payment.
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    Minimum alternate tax definitions shape MAT/AMT computation and Ind AS transition treatment, narrowing tax arbitrage opportunities.
    Clause 206(19) supplies granular definitions aligning MAT/AMT computation with Ind AS convergence, insolvency law and cross statutory terms. Key terms include adjudicating authority (IBC), convergence date, transition amount with specified exclusions, net worth, company classifications, securities, tribunal, unit (IFSC) and year of convergence. These definitions phase in Ind AS transition impacts, harmonize tax and insolvency treatment, clarify eligibility for concessional AMT rates, and reduce tax arbitrage and interpretive disputes compared with the narrower definitions in Section 115JF.
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    Minimum alternate tax exclusions: narrow MAT/AMT to specified taxpayers including life insurers, alternative regime opters, presumptive and small taxpayers.
    Clause 206(18) narrows MAT/AMT applicability by exempting companies with life insurance income, taxpayers who opt for specified alternative tax regimes, persons taxed under special or presumptive computation sections, specified funds identified in the Schedule, and non corporate persons whose adjusted total income falls below the statutory threshold; the exclusions reflect sectoral accounting differences, aim to promote concessional regimes and financial competitiveness, and reduce compliance burdens while requiring clear definitions and anti abuse safeguards.

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      Set-off and Withholding of Tax Refunds : Clause 438 of the Income Tax Bill, 2025 Vs. Section 245 of the Income-tax Act, 1961

      3 July, 2025

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      Clause 438 Set off and withholding of refunds in certain cases.

      Income Tax Bill, 2025

      Legal Commentary on Clause 438 of the Income Tax Bill, 2025 and its Comparison with Section 245 of the Income-tax Act, 1961

      Introduction

      Clause 438 of the Income Tax Bill, 2025 and Section 245 of the Income-tax Act, 1961, both address the mechanism for set-off and withholding of tax refunds in cases where the taxpayer has outstanding tax liabilities or where assessment/reassessment proceedings are pending. These provisions are central to the administration of direct tax refunds and reflect the balancing act between taxpayer rights and the protection of revenue interests. The evolution from Section 245 to Clause 438 demonstrates the legislature's response to administrative needs, judicial interpretations, and policy imperatives in tax administration.

      This commentary undertakes a detailed, provision-wise analysis of Clause 438, explores its objectives and practical implications, and provides a comparative analysis with the existing Section 245. The analysis also highlights significant legislative changes, their rationale, and the likely impact on stakeholders.

      Objective and Purpose

      The core objective of both Clause 438 and Section 245 is to empower tax authorities to set off tax refunds due to a taxpayer against any outstanding tax dues and to withhold refunds in specific circumstances. This serves multiple purposes:

      • Prevents unnecessary outflow of government revenue when dues are pending from the taxpayer.
      • Ensures administrative efficiency by avoiding circular transactions (paying refunds and then pursuing recovery).
      • Provides a statutory framework that balances the interests of the taxpayer (timely refund) and the revenue (protection against loss).

      The legislative intent is also to provide procedural safeguards, such as written intimation and recorded reasons, to prevent arbitrary or unjustified withholding or set-off of refunds. The historical background of Section 245 reveals that over time, the provision has been refined to address issues arising from judicial scrutiny and practical challenges in tax administration.

      Detailed Analysis of Clause 438 of the Income Tax Bill, 2025

      1. Sub-section (1): Set-off of Refunds

      Text: "Where a refund becomes due or is found to be due to any person under this Act, the Assessing Officer or Commissioner or Principal Commissioner or Chief Commissioner or Principal Chief Commissioner, may instead of payment of the refund, set off the amount to be refunded or any part of that amount, against the sum, if any, remaining payable under this Act by such person."

      Analysis: This sub-section authorizes specified tax authorities to set off any refund due to a taxpayer against any outstanding tax liability under the Act. The language is broad, covering any refund arising under any provision of the Act and any sum "remaining payable." This ensures that tax authorities can administratively adjust dues without the need for separate recovery proceedings.

      The officers empowered under this clause include the Assessing Officer and various levels of Commissioners, reflecting the hierarchical structure of the tax administration. The discretion to set off is not automatic; it is an administrative decision but is circumscribed by procedural safeguards in subsequent sub-sections.

      Key Features:

      • Applies to any refund under the Act.
      • Empowers a range of tax officers.
      • Allows for partial or full set-off.
      • Does not require a formal recovery proceeding for the outstanding amount.

      Potential Issues:

      • The provision is silent on whether the taxpayer can contest the set-off, though procedural safeguards exist in sub-section (2).
      • No explicit mention of the priority of dues (e.g., tax, interest, penalty), which may lead to interpretational disputes.

      2. Sub-section (2): Procedural Safeguard-Intimation in Writing

      Text: "Any action under sub-section (1) shall only be taken after giving intimation in writing to such person of the action proposed to be taken."

      Analysis: This sub-section mandates that before effecting any set-off, the taxpayer must be informed in writing. This is a significant procedural safeguard, ensuring transparency and providing the taxpayer an opportunity to respond or clarify any discrepancies.

      The requirement of "intimation" (not "notice") suggests that the provision is for information rather than for inviting objections. However, in practice, this intimation may serve as a trigger for the taxpayer to raise objections, if any, or to seek clarification from the tax authorities.

      Key Features:

      • Mandatory written intimation before set-off.
      • Enhances taxpayer awareness and administrative transparency.

      Potential Issues:

      • The provision does not specify a time frame for the intimation or for the taxpayer to respond.
      • No explicit right for the taxpayer to object or appeal against the proposed set-off at this stage.

      3. Sub-section (3): Withholding of Refunds

      Text: "Where-(a) a part of the refund is set off under sub-section (1); or (b) no such amount is set off, and refund becomes due to a person, and the Assessing Officer, having regard to the fact that proceedings for assessment or reassessment are pending in the case of the person, may, for reasons to be recorded in writing and with the previous approval of the Principal Commissioner or the Commissioner, withhold the refund up to sixty days from the date on which such assessment or reassessment is made."

      Analysis: This sub-section empowers the Assessing Officer to withhold the refund for up to sixty days if assessment or reassessment proceedings are pending. The exercise of this power is subject to two critical safeguards:

      • Reasons must be recorded in writing.
      • Prior approval of the Principal Commissioner or Commissioner is required.

      The provision recognizes that pending proceedings may affect the correctness or quantum of the refund claimed. The time-bound nature of the withholding (sixty days) is designed to prevent indefinite retention of taxpayer funds and to ensure administrative discipline.

      Key Features:

      • Applies where assessment or reassessment is pending.
      • Withholding is not indefinite-maximum period is sixty days from completion of assessment/reassessment.
      • Requires written reasons and higher-level approval.

      Potential Issues:

      • No explicit provision for taxpayer representation before withholding.
      • The phrase "having regard to the fact that proceedings... are pending" may be open to subjective interpretation.
      • Does not specify consequences for non-adherence to the sixty-day limit or for failure to record reasons adequately.

      Comparative Analysis with Section 245 of the Income-tax Act, 1961

      1. Structural and Substantive Similarities

      • Core Mechanism: Both provisions empower tax authorities to set off refunds against outstanding dues and to withhold refunds in specified circumstances. The language and structure of Clause 438 closely mirror Section 245, reflecting a conscious legislative choice to retain the established framework.
      • Procedural Safeguards: Both require written intimation before set-off and mandate recorded reasons and higher-level approval for withholding refunds.
      • Time-bound Withholding: Both provisions limit the withholding period to sixty days from the date of assessment/reassessment.
      • Administrative Hierarchy: The same set of officers is empowered under both provisions, ensuring continuity in administrative practice.

      2. Key Differences and Legislative Evolution

      • Omission of Revenue Prejudice Clause:
        • Earlier versions of Section 245 (prior to the 2024 amendment) allowed withholding of refunds if the Assessing Officer was of the opinion that granting the refund was "likely to adversely affect the revenue." This phrase was omitted by the Finance (No. 2) Act, 2024, aligning Section 245 more closely with the current language of Clause 438, which bases withholding solely on the pendency of assessment/reassessment proceedings.
        • This change narrows the discretion of the Assessing Officer, reducing subjectivity and potential for arbitrary withholding, and brings greater certainty for taxpayers.
      • Wording and Structure:
        • Clause 438 is more succinct and omits certain historical references present in Section 245, reflecting legislative intent to modernize and streamline the provision.
        • Section 245, as it stands after the 2024 amendment, is substantively identical to Clause 438, indicating that the new Bill seeks to consolidate and clarify rather than radically alter existing law.
      • Scope of Authority:
        • Both provisions empower the same officers. Earlier, Section 245 also included appellate authorities, but the current versions focus on the assessment hierarchy, in line with administrative reforms.
      • Transitional and Interpretational Issues:
        • The transition from Section 245 to Clause 438 may raise issues regarding pending cases, but the substantive continuity minimizes disruption.

      3. Judicial Interpretations and Doctrinal Developments

      Over the years, courts have interpreted Section 245 to require strict compliance with procedural safeguards. Key judicial principles include:

      • Written intimation is mandatory; set-off without such intimation is invalid.
      • Withholding of refunds must be justified by cogent reasons and subject to higher-level approval.
      • Withholding cannot be indefinite; any delay beyond the prescribed period is subject to judicial scrutiny.
      • The taxpayer has a right to challenge arbitrary or unjustified set-off or withholding by way of writ petitions or appeals.

      Clause 438, by retaining these safeguards, is designed to withstand judicial scrutiny and ensure that taxpayer rights are not compromised.

      4. Comparative Perspective: Other Jurisdictions

      The power to set off refunds against outstanding dues is a common feature in tax legislation globally. For instance:

      • United Kingdom: HMRC can set off refunds against other tax debts under the Taxes Management Act, subject to notice requirements.
      • United States: The Internal Revenue Code permits the IRS to offset tax refunds against federal debts, with certain procedural protections.
      • Australia: The ATO can offset credits against tax debts under the Taxation Administration Act.

      The Indian approach, as reflected in Clause 438 and Section 245, is consistent with international practice but provides enhanced procedural safeguards, particularly regarding written intimation and time-bound withholding.

      Practical Implications

      For Taxpayers:

      • Potential delays in receiving refunds if there are outstanding dues or pending proceedings.
      • Increased need for vigilance regarding written intimations and the status of assessments/reassessments.
      • Possibility to seek clarification or challenge withholding if procedural safeguards are not followed.

      For Tax Authorities:

      • Administrative streamlining of refund and recovery processes.
      • Requirement to maintain detailed records and obtain necessary approvals before withholding refunds.
      • Potential for increased scrutiny from taxpayers and courts regarding procedural compliance.

      For the Revenue:

      • Reduces risk of revenue loss due to premature refund payments.
      • Ensures that refunds are not paid out when there is a likelihood of subsequent tax demand arising from pending proceedings.

      Compliance Requirements:

      • Taxpayers must ensure all outstanding dues are cleared to avoid set-off.
      • Tax authorities must adhere to procedural safeguards to prevent legal challenges.

      Conclusion

      Clause 438 of the Income Tax Bill, 2025, represents a modernized and clarified restatement of the principles enshrined in Section 245 of the Income-tax Act, 1961. By retaining the core mechanisms of set-off and withholding, while streamlining language and narrowing discretion, the legislature seeks to balance revenue protection with taxpayer rights. The procedural safeguards embedded in the provision-mandatory intimation, recorded reasons, and higher-level approval-reflect the cumulative learning from administrative practice and judicial pronouncements.

      The omission of the "adverse effect on revenue" criterion marks a significant shift towards greater objectivity and predictability in the withholding of refunds. The sixty-day limit ensures that taxpayers are not unduly deprived of their funds, while the requirement for written reasons and approvals guards against misuse of power. As tax administration evolves, further refinements may be necessary to address issues such as taxpayer representation, timelines for response, and clarity on the priority of dues. Nevertheless, Clause 438, in its current form, provides a sound statutory framework for the set-off and withholding of refunds in the Indian direct tax system.


      Full Text:

      Clause 438 Set off and withholding of refunds in certain cases.

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