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Issues: (i) whether an assessee whose application under the 2017 amnesty scheme was still pending could seek relief under the 2020 amnesty scheme; (ii) whether amounts paid pursuant to judicial orders and interim directions were to be appropriated under Section 91 of the Kerala Value Added Tax Act, 2003 or under the 2020 amnesty scheme; and (iii) whether any excess amount remaining after settlement under the 2020 scheme was refundable.
Issue (i): Whether an assessee whose application under the 2017 amnesty scheme was still pending could seek relief under the 2020 amnesty scheme.
Analysis: Section 10(12) of the Kerala Finance Act, 2020 expressly permits assessees who had earlier opted to settle arrears under the former scheme, but had not completed payment, to opt under the 2020 scheme. The pendency of the earlier amnesty application did not by itself defeat the later application, since the liability had not been finally settled under the earlier scheme.
Conclusion: The assessee was entitled to maintain and pursue the amnesty application under the 2020 scheme.
Issue (ii): Whether amounts paid pursuant to judicial orders and interim directions were to be appropriated under Section 91 of the Kerala Value Added Tax Act, 2003 or under the 2020 amnesty scheme.
Analysis: Section 10(8) of the Kerala Finance Act, 2020 overrides Section 91 of the Kerala Value Added Tax Act, 2003 for payments or deposits made after service of demand notice and directs that such amounts be given credit as tax before computing the arrears under the scheme. The amounts paid by the assessee pursuant to the Supreme Court order, the statutory appeal, and the interim order of the High Court were treated as provisional deposits made in the backdrop of pending litigation and were therefore required to be reckoned under the amnesty scheme rather than under the general appropriation rule in Section 91.
Conclusion: The payments were to be adjusted under the 2020 amnesty scheme and not appropriated under Section 91 of the Kerala Value Added Tax Act, 2003.
Issue (iii): Whether any excess amount remaining after settlement under the 2020 scheme was refundable.
Analysis: Section 10(9) bars refund only of the amount actually settled under the scheme. It does not prohibit refund of any surplus that remains after the scheme computation is completed and the liability is fully settled. Accordingly, if the assessee's remittances exceed the amount payable under the scheme, the excess cannot be retained by the Department merely by invoking the refund bar.
Conclusion: Any excess amount remaining after settlement under the 2020 scheme was refundable to the assessee.
Final Conclusion: The amnesty application had to be processed under the 2020 scheme, the disputed remittances had to be credited under that scheme, and any surplus remaining after full settlement was liable to be returned.
Ratio Decidendi: Where a special amnesty enactment contains a non-obstante crediting provision, payments made after demand notice in the course of pending tax litigation must be reckoned under the scheme rather than under the ordinary appropriation rule, and any amount not absorbed in the final settlement remains refundable as surplus.
Amnesty scheme crediting and refund rules allow pending applicants to shift schemes and recover surplus remittances.
The Kerala High Court noted that Section 10(12) of the Kerala Finance Act, 2020 allowed an assessee with a pending 2017 amnesty application to seek relief under the 2020 scheme because the earlier liability had not been finally settled. It also treated payments made pursuant to judicial orders and interim directions as deposits to be credited under the 2020 amnesty scheme under Section 10(8), which overrides the ordinary appropriation rule in Section 91 of the Kerala Value Added Tax Act, 2003. Finally, Section 10(9) barred refund only of the amount actually settled under the scheme, so any excess remittance left after computation and full settlement remained refundable.
Entitlement to maintain and pursue the amnesty application under the 2020 scheme - sale of margarine within the State of Kerala - Appropriation of payments towards tax arrears - Non-obstante clause overriding statutory appropriation - Refund of excess amount after amnesty settlement. Whether the petitioner can maintain an application for amnesty under the 2020 Scheme since, it had already filed a separate application under the 2017 Scheme, which is still pending ? - HELD THAT: - The Court held that Section 10(12) of the Kerala Finance Act, 2020 expressly permits an assessee who had earlier opted for settlement under previous schemes, but had not completed payment thereunder, to seek settlement under the 2020 scheme. Since the earlier order granting amnesty under the 2017 scheme had been set aside and the liability had not been settled under that scheme, the petitioner remained entitled to invoke the 2020 scheme. [Paras 14] The petitioner's application under the 2020 amnesty scheme was maintainable notwithstanding the pendency of the earlier 2017 application. Credit of post-demand payments as tax - Exclusion of statutory appropriation under Section 91 - Deposits made during pending litigation - HELD THAT: - Construing Section 10(8) of the 2020 scheme, the Court held that its non-obstante clause expressly excludes the operation of Section 91 of the KVAT Act in relation to amounts remitted or deposited after service of demand notice. The statutory command is that such amounts must be given credit as tax before reckoning the arrears to be settled under the scheme. The Court rejected the contention that Section 10(8) operated only prospectively so as to preserve earlier appropriations under Section 91, holding that the provision covers payments made after service of demand notice and does not exclude such payments from its ambit merely because they were earlier made during pending proceedings. The Court further held that the non-obstante clause in Section 10(1) was intended to override the binding effect of prior adjudications on liability for the purpose of enabling settlement, and not to nullify specific court directions treating a remittance as a deposit incapable of appropriation without further orders. On the facts, the payments made pursuant to orders of the Supreme Court, the statutory appeal deposit, and the interim order of the High Court were therefore to be treated as provisional deposits and dealt with only in accordance with the 2020 scheme. [Paras 19, 20, 22, 23, 24] The respondents were directed to process the petitioner's amnesty claim by treating the remittances referred to in the judgment under the 2020 scheme alone and not by applying Section 91 of the KVAT Act. Refund of excess amount after amnesty settlement - Scope of bar against refund under amnesty scheme - HELD THAT: - The Court interpreted Section 10(9) as barring refund only of the amount settled under the scheme, and not of any surplus remaining after the petitioner's liability is worked out in terms of the scheme. The provision was held to preclude reopening of a completed settlement because of subsequent judicial developments, but not to authorise the department to retain amounts lying in excess of the sum payable under the scheme. Since Section 91 stood excluded for this purpose and the petitioner's remittances had to be reckoned under the scheme, any balance remaining after settlement was refundable. [Paras 25, 26, 27, 28] If any amount remained in excess after settlement under the 2020 amnesty scheme, the petitioner was held entitled to refund, limited to the amounts claimed in the writ petition. Final Conclusion: The writ petitions were allowed. The Court held that the petitioner's application under the 2020 amnesty scheme was maintainable, that the remittances in question had to be given credit under that scheme and not appropriated under Section 91 of the KVAT Act, and that any excess remaining after settlement was refundable within the limits claimed.