Sir,
The late filing is not a punishable offence, warranting an additional penalty beyond the prescribed late fee. Imposing a further penalty under Section 125 would contradict the legislative intent as enumerated u/s 126. The penalty shall not be imposed for minor breaches of tax regulations or procedural requirements where the amount of tax involved is minimal and there is no fraudulent intent or gross negligence. The provision under Section 125 of the Act would apply only in the case where no penalty is levied under Section 47 of the Act.
The imposition of a penalty must be reasonable, proportionate, and consistent with statutory provisions and follow natural justice where there was no intent of misstatement or deliberate defiance of law. Section 47 is an independently operative section that would not call for additional or general penalty.
There are a few case laws against the imposition of additional penalty u/s 125 for late filing of returns.
M/s. Rathore Building Material vs. The Commissioner Of State Tax And 2 Others - 2023 (12) TMI 555 - ALLAHABAD HIGH COURT by the Hon’ble Allahabad High Court.
Madras High Court Judgement in the case of Tvl. Jainsons Castors & Industrial Products vs The Assistant Commissioner (St) Ekkatuthangal Assessment Circle - 2025 (2) TMI 1000 - MADRAS HIGH COURT in Writ Petition No.36614 of 2024 and W.M.P. No. 39493 of 2024 / 4 February, 2025. In this case, the Hon’ble Court held that the penalty was imposed in the form of a late fee in terms of Section 47 of the Act. Therefore, the general penalty of Rs. 50,000/- towards CGST and SGST is not correct.
Accordingly, the querist can contest for levy of a penalty u/s 125.