We have filed GSTR 9 by availing benefit of amnesty scheme on 28-06-2023.
The clients GSTIN is suo-moto cancelled on 01-06-2020
The GST portal has not auto calculated late fees for delay in filing GSTR-9.
Hence the late fees were not paid. But GSTR-9 is accepted .
Now the officer says as late fees are not paid GSTR-9 filed is not acceptable under amnesty and you have to pay late fees
Please guide
TaxTMI 
