8. Dear Shri Kaustubh Karandikar Ji,
Kindly allow me to explain my reasoning behind earlier-shared views:
Sub-rule (3) of rule 80 of the CGST Rules, 2017 reads as follows:
"Every registered person, other than those referred to in the second proviso to section 44, an Input Service Distributor, a person paying tax under section 51 or section 52, a casual taxable person and a non[1]resident taxable person, whose aggregate turnover during a financial year exceeds five crore rupees, shall also furnish a self-certified reconciliation statement as specified under section 44 in FORM GSTR-9C along with the annual return referred to in sub-rule (1), on or before the thirty-first day of December following the end of such financial year, electronically through the common portal either directly or through a Facilitation Centre notified by the Commissioner.]"
while amended Section 44 states about '....an annual return which may include a self-certified reconciliation statement ....', the fact remains that there is no annual return prescribed which includes a self-certified reconciliation statement therein. Above reproduced rule 80 (3) requires furnishing a self-certified reconciliation statement as specified under section 44 in FORM GSTR-9C along with the annual return referred to in sub-rule (1)
And late fee prescribed u/s 47 is for delayed / non-filing of return specified u/s 44. and return specified u/s 44 is only 'Form GSTR-9' (& Not the Form GSTR-9C) as per Rule 80 (1) of the CGST Rules, 2017 and same reads as follows:
"Every registered person, other than those referred to in the second proviso to section 44, an Input Service Distributor, a person paying tax under section 51 or section 52, a casual taxable person and a non-resident taxable person, shall furnish an annual return for every financial year as specified under section 44 electronically in FORM GSTR-9 on or before the thirty-first day of December following the end of such financial year through the common portal either directly or through a Facilitation Centre notified by the Commissioner:
Provided that a person paying tax under section 10 shall furnish the annual return in FORM GSTR-9A."
These are ex facie views of mine and the same should not be construed as professional advice / suggestion. And I respect contrary views.