While filing the Appeal, the form takes to pre-deposit form. In that form "10%" maybe changed to higher percentage say 100%. This would achieve your goal I believe.
Legally also, Section 107 (6) reads as:
(6) No appeal shall be filed under sub-section (1), unless the appellant has paid-
(a) in full, such part of the amount of tax, interest, fine, fee and penalty arising from the impugned order, as is admitted by him; and
(b) a sum equal to ten per cent. of the remaining amount of tax in dispute arising from the said order subject to a maximum of twenty-five crore rupees, in relation to which the appeal has been filed.
So, 10% seems to be only minimum amount for filing appeal.
This view I am putting forth as payment through DRC-03 can have following consequence.
1. Depart may contest that any amount paid in DRC-03 is voluntarily paid and hence not protested. Though it may not stand the test of law, it may can prolong litigation.
2. You may have to file refund application against DRC-03 explaining all the issues etc.
Alternatively, if higher amount is paid as pre-deposit I believe it doesn't lose character of pre-deposit and hence getting refund back on success in appeal will be easier.