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Sir,
If Transport charges of ₹ 55000/- is paid by you then under reverse charge mechanism as a consignor you are liable to pay the service tax but you cannot avail the credit of service tax paid by since it cannot be treated as input service for you. It is input service only to your consignee. It is the normal practice of excise assessees to despatch the excisable good to the consignee on 'TO PAY' basis.
If you indicate ₹ 1,00,000/- as freight in your invoice then it will be treated as transport charges charged by you and you have to pay service tax only on that amount. The Department is not concerned what you have actually paid to the Transporter for levy of service tax. However, for excise valuation purpose the difference between ₹ 1,00,000/- and ₹ 55,000/- will be treated as part of your transaction value and excise duty will be demanded by the Department on the differential amount.
Thanks for nice explanation, Shri Rajagopalan, Sir
Agree with the Rajagopalan Ranganathan.